Only 1 genome per FASTA file is acceptable. (Complete genome in a single-FASTA file or draft genome in a multi-FASTA file)

Optional, but recommendable to specify a unique value to distinguish the sample.


When enabled, query FASTA will be modified based on the mapping result to the reference. (Will extract mapped regions and discard unmapped. If the mapped regions are fragmented, they will be scaffolded (concatenated) using runs of Ns representing assembly gaps of estimated length.)

Disable scaffolding process. Ignored when 'Modify query FASTA' is not specified.